AugmentClaude

Scientific Paper Search

Search scientific papers and extract structured experimental data like methods, results, and sample sizes.

Installation

  1. Make sure Claude is on your device and in your terminal.

    Skills load from ~/.claude/skills/ when Claude Code starts up — so you need it on your machine first. If you don't have it yet, install it once with the command below, then run claude in any terminal to verify.

    One-time setup
    npm i -g @anthropic-ai/claude-code

    Already have it? Skip ahead.

  2. Paste into Claude Code or into your terminal.

    This copies the whole skill folder into ~/.claude/skills/bgpt-paper-search-k-dense-ai/ — the SKILL.md plus any scripts, reference docs, or templates the skill ships with. Safe default: works for every skill.

    Faster alternative (instruction-only skills)

    Skips the clone and grabs only the SKILL.md file. Don't use this if the skill ships Python scripts, reference markdowns, or asset templates — they won't be downloaded and the skill will fail when it tries to load them.

    Quick install (SKILL.md only)
    Sign up to copy
  3. Restart Claude Code.

    Quit and reopen Claude Code (or any other agent that loads from ~/.claude/skills/). New skills are picked up on startup.

  4. Just ask Claude.

    Skills auto-activate when your request matches the skill's description — no slash command needed. Trigger phrases live in the skill's own frontmatter; you can read them in the “What this skill does” section above.

Prefer to read the source first? Open on GitHub.

When Claude uses it

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.

What this skill does

BGPT Paper Search

Overview

BGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text studies. Unlike traditional literature databases that return titles and abstracts, BGPT returns structured data from the actual paper content — methods, quantitative results, sample sizes, quality assessments, and 25+ metadata fields per paper.

When to Use This Skill

Use this skill when:

  • Searching for scientific papers with specific experimental details
  • Conducting systematic or scoping literature reviews
  • Finding quantitative results, sample sizes, or effect sizes across studies
  • Comparing methodologies used in different studies
  • Looking for papers with quality scores or evidence grading
  • Needing structured data from full-text papers (not just abstracts)
  • Building evidence tables for meta-analyses or clinical guidelines

Setup

BGPT is a remote MCP server — no local installation required. Configure it in your agent's MCP settings before use; this skill instructs the agent to call the search_papers MCP tool and does not enable MCP access by itself.

Claude Desktop / Claude Code

Add to your MCP configuration:

{
  "mcpServers": {
    "bgpt": {
      "command": "npx",
      "args": ["mcp-remote", "https://bgpt.pro/mcp/sse"]
    }
  }
}

npm (alternative)

npx bgpt-mcp

Usage

Once the BGPT MCP server is configured, call its search_papers tool via the agent's MCP interface (not via Bash):

Search for papers about: "CRISPR gene editing efficiency in human cells"

The server returns structured results including:

  • Title, authors, journal, year, DOI
  • Methods: Experimental techniques, models, protocols
  • Results: Key findings with quantitative data
  • Sample sizes: Number of subjects/samples
  • Quality scores: Study quality assessments
  • Conclusions: Author conclusions and implications

Pricing

  • Free tier: 50 searches per network, no API key required
  • Paid: $0.01 per result with an API key from bgpt.pro/mcp

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